PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590762.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 284aa    MW: 31994.3 Da    PI: 4.4117
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-1913103199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   + ++s  + +p +f e+ + +   ++t +l+   g +W+v +  +k ++  ++t+GW++F+++++Lk+g+f++F +dg+++f   v+
  XP_013590762.1  13 FFKVF--LSETASESMAIPMSFNEHLEDP--LPQTAKLQGIGGGVWTVSF--KKIRDCAYFTSGWSKFAEDHELKDGEFLTFAYDGSHTF--EVS 99 
                     88999..666777779******9655655..889****************..99998899************************998888..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     vf +
  XP_013590762.1 100 VFGR 103
                     8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-257106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-239106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.04311104IPR003340B3 DNA binding domain
CDDcd100171.10E-1911101No hitNo description
SMARTSM010197.2E-2413104IPR003340B3 DNA binding domain
PfamPF023627.3E-1713102IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-9187266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-6187266IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.51190279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSESEEDVDL PRFFKVFLSE TASESMAIPM SFNEHLEDPL PQTAKLQGIG GGVWTVSFKK  60
IRDCAYFTSG WSKFAEDHEL KDGEFLTFAY DGSHTFEVSV FGRSGCKEIR AEVETVEFSD  120
ANSDKEEEED SSVVADSNEE EDEGDDDSSF IAGEDDEVSQ SLSHVDSDDT VSNAEVVAGF  180
SNLEVESNPC FTTTLKNRIY ELLIPANVVK EHGLTFCDRV KYIDGEGIMH GAKGKWSDDR  240
ICFKGWDRIC RRNRLKERDT VHCEMLHIRK KVHTIKITVT RGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-201210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590762.10.0PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV51e-102REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A0D3CTK80.0A0A0D3CTK8_BRAOL; Uncharacterized protein
STRINGBra003130.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-96B3 family protein